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Table 7 Assembly results on recruited reads with a partial CDS sequence for HPgV as reference

From: TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

Tool Contig # N50 HPgV cov. (%) Tool Contig # N50 HPgV cov. (%)
TAR-VIR 5 7959 86.0 SPAdes 6 8957 94.0
SGA 41 591 49.0 SAVAGE 35 580 49.5