Table 7 Assembly results on recruited reads with a partial CDS sequence for HPgV as reference
From: TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data
Tool | Contig # | N50 | HPgV cov. (%) | Tool | Contig # | N50 | HPgV cov. (%) |
|---|---|---|---|---|---|---|---|
TAR-VIR | 5 | 7959 | 86.0 | SPAdes | 6 | 8957 | 94.0 |
SGA | 41 | 591 | 49.0 | SAVAGE | 35 | 580 | 49.5 |