Table 3 The impact of the parameters of YALFF for various metrics T.P., F.P., F.N., Precision, Recall, F-Measure, Compression (LZMA) and Time (min.)
From: Better quality score compression through sequence-based quality smoothing
Parameters | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
k | L.T. | H.T. | T.P. | F.P. | F.N. | Prec. | Recall | F-M. | Compr. | Time |
16 | 6 | 40 | 2659170 | 276596 | 1422714 | 0.9058 | 0.6515 | 0.7579 | 10.107 | 11850 |
32 | 6 | 40 | 2603620 | 221368 | 1478264 | 0.9216 | 0.6378 | 0.7539 | 9.186 | 2934 |
48 | 6 | 40 | 2588254 | 220176 | 1493631 | 0.9216 | 0.6341 | 0.7513 | 5.936 | 509 |
32 | 0 | 40 | 2626957 | 253747 | 1454928 | 0.9119 | 0.6436 | 0.7546 | 9.181 | 2657 |
32 | 3 | 40 | 2603891 | 221696 | 1477993 | 0.9215 | 0.6379 | 0.7539 | 9.113 | 2315 |
32 | 12 | 40 | 2601463 | 219417 | 1480421 | 0.9222 | 0.6373 | 0.7537 | 8.813 | 2239 |
32 | 3 | 30 | 2616530 | 225716 | 1465356 | 0.9206 | 0.6410 | 0.7558 | 9.597 | 565 |
32 | 3 | 35 | 2612145 | 223372 | 1469743 | 0.9212 | 0.6399 | 0.7552 | 9.429 | 848 |
32 | 3 | 37 | 2609021 | 222494 | 1472866 | 0.9214 | 0.6392 | 0.7548 | 9.115 | 1279 |