From: STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data
Capability to identify correct alleles | Capability to identify new alleles | |||
---|---|---|---|---|
SRST2 / stringMLST output | High stringency | Low stringency | High stringency | Low stringency |
allele_1* | Missed the correct allele | Hit the correct allele | (this case doesn’t exist because allele_1 is not present) | (this case doesn’t exist because allele_1 is not present) |
allele_2* to allele_100* | Missed the correct allele | Missed the correct allele | Hit a new allele is present | Missed a new allele is present |