Table 3 Capability to identify new alleles
From: STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data
Software | Percentage of no-output | Capability to identify new alleles |
|---|---|---|
STRAIN | 0.6% (22/3780) | 98.7% (3730/3780) |
SRST2 high stringency | 1.8% (69/3780) | 85.9% (3247/3780) |
SRST2 low stringency | 1.8% (69/3780) | 1.1% (41/3780) |
stringMLST high stringency | 0.3% (12/3780) | 80.5% (3057/3780) |
stringMLST low stringency | 0.3% (12/3780) | 0% (0/3780) |
GRAbB | 2.7% (101/3780) | 97.1% (3669/3780) |