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Table 1 Top hits from CALGB 40101

From: Efficient estimation of grouped survival models

rsID

Chr:Position

Annotation*

Location

MAF

P-value

\(\hat {\beta }\)

rs12432793

14:75631922

FLVCR2

promoter

0.12

1.2×10−6

-0.81

rs17666314

2:193496633

PCGEM1/LINC01821

intergenic

0.063

1.6×10−6

-1.1

rs9435869

1:229252924

RHOU/RAB4A

intergenic

0.15

2.5×10−6

-0.67

rs11015445

10:27001232

ANKRD26

intron

0.052

2.9×10−6

-1.1

rs4747583

10:27055768

ANKRD26

intron

0.052

2.9×10−6

-1.1

rs1035538

16:60045258

LINC02141

intron

0.064

3.3×10−6

-0.99

rs11627718

14:90630200

TTC7B

intron

0.12

5×10−6

-0.74

rs9684260

4:65303925

LINC02232/EPHA5

intergenic

0.36

5.1×10−6

0.48

rs7349683

4:65332086

EPHA5

coding

0.36

5.2×10−6

0.48

rs6481837

10:33156436

ITGB1/NRP1

intergenic

0.39

6.3×10−6

-0.45

rs1286439

14:90632867

TTC7B

intron

0.12

6.7×10−6

-0.74

rs4737264

8:55198762

XKR4

intron

0.21

7.4×10−6

0.53

rs9785155

8:4312184

CSMD1

intron

0.24

7.5×10−6

-0.54

rs10503252

8:4312237

CSMD1

intron

0.24

8.1×10−6

-0.54

rs10771973

12:32640040

FGD4

intron

0.32

8.1×10−6

0.46

rs1551124

4:65297857

LINC02232/EPHA5

intergenic

0.36

8.6×10−6

0.47

rs1517347

2:208649191

PTH2R

intron

0.27

8.6×10−6

-0.5

rs1286422

14:90647193

LOC101928909

intron

0.12

8.8×10−6

-0.72

rs10774538

12:119965993

CIT/BICDL1

intergenic

0.14

9.5×10−6

-0.64

rs1842501

8:55190458

XKR4

intron

0.21

1.1×10−5

0.53

rs6754133

2:114779214

DPP10

intron

0.056

1.4×10−5

-1

rs17781082

12:67082547

LOC102724421

intron

0.42

1.4×10−5

0.46

rs11924857

3:150955018

CLRN1-AS1

intron

0.21

1.4×10−5

-0.52

rs11680024

2:49308717

FSHR/NRXN1

intergenic

0.12

1.5×10−5

-0.71

rs11582158

1:179507372

AXDND1

intron

0.23

1.5×10−5

-0.51

rs12138026

1:33487056

ZSCAN20

intron

0.1

1.7×10−5

-0.74

rs6999054

8:55201958

XKR4

intron

0.21

1.8×10−5

0.51

rs1903216

3:187911715

BCL6/LPP-AS2

intergenic

0.48

1.9×10−5

0.44

rs13257404

8:120112872

COL14A1

intron

0.056

1.9×10−5

-1

rs12403933

1:179454485

AXDND1

intron

0.23

2.1×10−5

-0.5

rs3862864

10:58153109

MIR3924/IPMK

intergenic

0.088

2.4×10−5

-0.77

rs11192557

10:105692925

SORCS3/LOC101927549

intergenic

0.12

2.5×10−5

-0.66

rs17753508

14:65590734

FUT8

intron

0.19

3.1×10−5

-0.55

rs1729775

13:95105689

ABCC4

intron

0.41

3.1×10−5

-0.44

rs7616728

3:26664146

LRRC3B

intron

0.16

3.2×10−5

-0.57

rs7936678

11:3610877

LOC101927708/ART5

intergenic

0.21

3.2×10−5

-0.52

rs10483776

14:65448149

FUT8

intron

0.19

3.6×10−5

-0.55

rs4530357

2:231675992

TEX44/PTMA

intergenic

0.44

3.7×10−5

-0.41

rs2233335

8:133248822

NDRG1

intron

0.38

3.7×10−5

-0.44

rs12191315

NA:NA

NA/NA

 

0.19

3.8×10−5

-0.52

rs4599356

4:144202300

GYPA/HHIP-AS1

intergenic

0.39

3.9×10−5

-0.43

rs10891842

11:115368305

CADM1

intron

0.42

4×10−5

0.4

rs7295447

12:119925810

CIT/BICDL1

intergenic

0.17

4.1×10−5

-0.55

rs11004791

10:55267443

PCDH15

intron

0.47

4.1×10−5

-0.39

rs2169100

NA:NA

NA/NA

 

0.27

4.1×10−5

-0.45

rs6714773

2:21266211

TDRD15/LINC01822

intergenic

0.28

4.2×10−5

-0.49

rs1993596

8:9365634

LOC157273

intron

0.45

4.3×10−5

0.42

rs11075766

16:70529368

SNORD111B

promoter

0.078

4.3×10−5

-0.77

rs929525

18:61429532

CDH20

intron

0.25

4.5×10−5

-0.49

rs2141236

2:155938902

NA/LINC01876

intergenic

0.34

4.5×10−5

0.39

  1. Top 50 hits, ranked by unadjusted P-value from analysis of 500,897 genome-wide SNPs. Annotation information was generated by using the VariantAnnotation [24], TxDb.Hsapiens.UCSC.hg38.knownGene [44] (based on [45]) and SNPlocs.Hsapiens.dbSNP150.GRCh38 [46] R extension packages. For intergenic SNPs, left/right flanking genes are reported. Chr: chromosome; MAF: minor allele frequency