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Table 2 The rejection rates out of 200 data sets for the goodness-of-fit test (Shortened as GoF in the table) based on equal frequency binning and the LRT for a 4-taxon tree, sequence length=500, α=5%

From: Testing adequacy for DNA substitution models

Rejection rate comparisons

True model

H 0

GoF test

LRT

Ha in LRT

SYM

SYM

5.5%

4.5%

GTR

GTR

SYM

98%

100%

GTR

SYM

JC69

100%

100%

GTR

GTR

JC69

100%

100%

GTR

SYM+D

SYM

31%

30.5%

SYM+D