Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

BMC Bioinformatics

Table 1 Real datasets used for the evaluation of the error correction tools

Abbr.	Organism	Reference ID	Reference	Platform	Insert size	Insert size	Cov.	Number of	Read length	Ref.	Dataset ID
			size		mean	STD		Reads	mean
R1	Homo sapiens chr. 21	HG19	40 Mbp	Illumina	312	14	33 ×	13 486 136	100 bp	[10, 22]	Ill. Data library
R2	Homo sapiens chr. 14	HG14	104 Mbp	Illumina	158	17	35 ×	36 504 800	101 bp	[12]	GAGE
R3	Caenorhabditis elegans	WS222	97 Mbp	Illumina	173	16	58 ×	57 721 732	101 bp	[5, 22, 37]	SRR543736
R4	Drosophila melanogaster	Release 5	116 Mbp	Illumina	281	92	52 ×	63 014 762	100 bp	[5, 22, 37]	SRR823377
R5	Drosophila melanogaster	Release 5	116 Mbp	Illumina	598	39	64 ×	75 938 276	101 bp	[5, 37]	SRR988075
R6	Arabidopsis thaliana	TAIR10	116 Mbp	Illumina	477	18	72 ×	93 429 346	90 bp	[38]	SRR1174256
P1	Drosophila melanogaster	Release 5	116 Mbp	PacBio	n/a	n/a	10 ×	169 923	7374 bp	[39]	SRR1204466
P2	Arabidopsis thaliana	TAIR10	116 Mbp	PacBio	n/a	n/a	13 ×	187 292	8298 bp	[39]	SRR1284707

ISSN: 1471-2105