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Table 1 Node and edge description in Chem2BioRDF

From: edge2vec: Representation learning using edge semantics for biomedical knowledge discovery

node type

number

edge type

number

edge type description

gene

21,738

hprd

30,215

protein protein interaction

compound

258,003

protein

11,258

has pathway

chebi

2,777

tissue

10,178

tissue gene expression

pathway

192

GO id

95,422

has GO

sider

1,051

family name

7,181

has gene family

gene-family

329

gene

2,929

cause disease

GO

9,710

chebi

15,986

has chemical ontology

substructure

290

drug

943

has pathway

tissue

507

cid

9,004

cause side effect

disease

1,284

expression

16,167

compound gene expression

  

substructure

6,169

has substructure

  

chemogenomics

522,545

bind