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Table 5 Compare node2vec & edge2vec difference on classification tasks

From: edge2vec: Representation learning using edge semantics for biomedical knowledge discovery

drug gene node2vec similarity edge2vec similarity drug gene node2vec similarity edge2vec similarity
DB11348 CADPS2 0.1196 0.6199 DB09130 CLEC3B 0.2177 0.6299
DB11348 NUCB1 0.2221 0.6613 DB09130 HSPA13 0.1547 0.6278
DB11348 TPT1 0.2233 0.6439 DB09130 IGLL1 0.1806 0.5856
DB11348 NUCB2 0.2668 0.6867 DB09130 SFPQ 0.1275 0.5281
DB11348 CIB2 0.2761 0.6946 DB09130 A1BG 0.2478 0.6483
DB11348 CAPS 0.2827 0.6765 DB08818 HMMR 0.1624 0.6072
DB11348 PEF1 0.3357 0.7472 DB08818 CD44 0.1408 0.5670
DB11348 CALR3 0.2396 0.6429 DB08818 HAPLN1 0.1672 0.5790
DB11348 CADPS 0.1715 0.5657 DB08818 VCAN 0.1877 0.6186
DB11348 FBN3 0.3306 0.7369 DB09131 CSTB 0.1675 0.5999