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Table 5 Compare node2vec & edge2vec difference on classification tasks

From: edge2vec: Representation learning using edge semantics for biomedical knowledge discovery

drug

gene

node2vec similarity

edge2vec similarity

drug

gene

node2vec similarity

edge2vec similarity

DB11348

CADPS2

0.1196

0.6199

DB09130

CLEC3B

0.2177

0.6299

DB11348

NUCB1

0.2221

0.6613

DB09130

HSPA13

0.1547

0.6278

DB11348

TPT1

0.2233

0.6439

DB09130

IGLL1

0.1806

0.5856

DB11348

NUCB2

0.2668

0.6867

DB09130

SFPQ

0.1275

0.5281

DB11348

CIB2

0.2761

0.6946

DB09130

A1BG

0.2478

0.6483

DB11348

CAPS

0.2827

0.6765

DB08818

HMMR

0.1624

0.6072

DB11348

PEF1

0.3357

0.7472

DB08818

CD44

0.1408

0.5670

DB11348

CALR3

0.2396

0.6429

DB08818

HAPLN1

0.1672

0.5790

DB11348

CADPS

0.1715

0.5657

DB08818

VCAN

0.1877

0.6186

DB11348

FBN3

0.3306

0.7369

DB09131

CSTB

0.1675

0.5999