Table 1 Performance of rkmh on samples from [10] which were manually reviewed for their infecting sublineages and coinfection status
N = 34 manually annotated samples | Agrees with annotations | disagrees with annotation | Concordance |
|---|---|---|---|
Primary Lineage | 32 | 2 | 95% |
Primary Sublineage | 31 | 3 | 91% |
Secondary Lineage | 24 | 10 | 71% |
Secondary Sublineage | 12 | 22 | 35% |
Coinfection status, lineage | 27 | 7 | 79% |
Coinfection status, sublineage | 24 | 10 | 70% |