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Table 2 ENTRNA: Pseudoknot-free and Pseudoknotted RNAs Common Features

From: ENTRNA: a framework to predict RNA foldability

Features

Calculation

Description

PerGC

\( \frac{\# of\ G\ nts+\# of\ C\ nts\ }{n} \)

GC percentage

Perbp

\( \frac{\# of\ nts\ that\ are\ base\ paired}{n} \)

Base pair percentage

RVent, 3

\( \frac{V_{ent,3}}{V_{ent,3}^{\ast }} \)

Normalized SSE with segment size 3

RVent, 4

\( \frac{V_{ent,4}}{V_{ent,4}^{\ast }} \)

Normalized SSE with segment size 4

RVent, 5

\( \frac{V_{ent,5}}{V_{ent,5}^{\ast }} \)

Normalized SSE with segment size 5

RVent, 6

\( \frac{V_{ent,6}}{V_{ent,6}^{\ast }} \)

Normalized SSE with segment size 6

RVent, 7

\( \frac{V_{ent,7}}{V_{ent,7}^{\ast }} \)

Normalized SSE with segment size 7

RVent, 8

\( \frac{V_{ent,8}}{V_{ent,8}^{\ast }} \)

Normalized SSE with segment size 8