Skip to main content

Table 2 SRAssembly of rice homologs

From: SRAssembler: Selective Recursive local Assembly of homologous genomic regions

Arabidopsis query

Rice homolog

Spliced alignment score

Homolog coverage

At1g01040.1

Os03g02970.1

0.997

1.000

At1g01050.1

Os05g36260.1

0.714

1.000

At1g01090.1

Os04g02900.1

0.997

1.000

At1g01230.1

Os07g26940.1

1.000

1.000

At1g01560.2

Os08g06060.1

0.967

1.000

At1g01620.1

Os07g26660.1

0.597

0.992

At1g01750.1

Os02g44470.1

0.780

1.000

At1g01820.1

Os06g03660.2

0.676

1.000

At1g01910.1

Os09g34970.1

0.889

0.843

At1g01940.1

Os06g04000.1

0.992

1.000

At1g01950.3

Os06g04560.1

0.492

0.800

At1g02130.1

Os01g08450.1

0.786

0.738

At1g02140.1

Os12g18880.1

0.778

0.981

At1g02500.1

Os01g18860.1

1.000

1.000

At1g02560.1

Os03g19510.1

0.820

0.908

At1g02780.1

Os03g21940.1

0.656

0.480

At1g02830.1

Os03g22340.1

0.696

0.841

At1g03190.1

Os05g05260.1

0.996

0.955

At1g03475.1

Os04g52130.1

1.000

0.913

At1g03630.1

Os10g35370.1

0.900

0.981

  1. Twenty Arabidopsis proteins were used as queries into rice reads. The homologous rice proteins were spliced-aligned to the assembled contigs. The best result for each query is shown here