Skip to main content

Table 1 Top-1, top-3, top-5 accuracy in identifying matching motif for TF binding (out of 422 experiments) with similarity score (p-value) smaller than 0.5 and 0.05, and the paired/unpaired rank tests of the proposed ranks of best matching filters between our method and the input-dependent methods

From: Visualizing complex feature interactions and feature sharing in genomic deep neural networks

 

Top 1

Top 3

Top 5

Ranksum

Wilcoxon

TOMTOM P-value

0.5

0.05

0.5

0.05

0.5

0.05

p-values

p-values

DeepResolve (ours)

412

407

421

418

422

421

N/A

N/A

DeepLIFT

418

418

420

420

421

421

0.784

0.412

Saliency*activation

404

393

419

419

420

420

7.478×10−7

1.049×10−9

Saliency

388

377

417

416

420

420

4.63×10−7

4.63×10−15

enhanced DeepMotif

217

89

310

123

343

147

N/A

N/A