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Table 4 Best performing ranking functions

From: VIST - a Variant-Information Search Tool for precision oncology

Models

SVM

MTL

Rank by:

Recall

MAP

MRR

nDCG

Recall

MAP

MRR

nDCG

RankScorê

0.636

0.113

0.173

0.307

0.570

0.088

0.119

0.260

PubDate * RankScore

0.634

0.113

0.168

0.306

0.560

0.083

0.109

0.254

CancerScore

0.618

0.092

0.115

0.274

0.569

0.091

0.121

0.263

KeywordScore

0.291

0.018

0.025

0.125

0.294

0.018

0.025

0.125

  1. All elements of a ranking function are sorted descending. The KeywordScore, completely neglecting cancer relatedness and clinical relevance of documents, is included as baseline. ^ used in production version of VIST
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BMC Bioinformatics

ISSN: 1471-2105

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