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Table 1 Gene Ontology Enrichment Analysis tools

From: FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis

Tools

Standalone

Open Source

Hist. data

Enrichment calc.

Background Set

Clusters

Interactive Plots

DAVID [3]

Windows XP/2K

No

Limited

Yes

Yes

Yes

No

REVIGO [4]

No

No

No

No

NA

Yes

Yes

WebGestalt [5]

No

No

No

Yes

Yes

No

No

Babelomics 5 [6]

No

No

No

Yes

Yes

No

No

PantherDB [7]

No

No

No

Yes

Yes

No

Yes

GORILLA [8]

No

No

No

Yes

Yes

No

No

FunSet

Yes

Yes

Yes

Yes

Yes

Yes

Yes

  1. The table compares the main features of GO enrichment web servers, including: (1) availability of a standalone tool; (2) availability of the web server source code as open source software; (3) option to choose historical GO data; (4) enrichment analysis calculations; (5) option to define a custom background set; (4) clustering of the terms; (5) interactive visualization