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Table 1 Trimming statistics for simulated reads corresponding to the average results for mate 1 and mate 2

From: FastqCleaner: an interactive Bioconductor application for quality-control, filtering and trimming of FASTQ files

 

SEN

SPC

PPV

NVP

MCC

AdapterRemoval

0.999

1.000

1.000

0.999

0.999

Skewer

0.999

1.000

1.000

0.999

0.999

cutadapt

0.907

0.985

0.983

0.914

0.894

FastqCleaner

0.803

0.987

0.985

0.834

0.804

  1. Acronyms: sensitivity (SEN), specificity (SPC), positive predictive value (PPV), negative predictive value (NPV), and Matthews correlation coefficient (MCC)
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BMC Bioinformatics

ISSN: 1471-2105

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