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Table 4 List of top three most used assembly programs for Metazoa (Year < 2016)

From: Shared data science infrastructure for genomics data

Kingdom Program Name species Total length Scaffold-count ScaffoldN50 ContigCount ContigN50
Metazoa SOAPdenovo 98 1.2B ± 0.7B 40 k ± 38 k 4.5 M ± 13 M 116 k ± 79 k 42 k ± 48 k
  AllPaths 54 1.5B ± 1.1B 11 k ± 13 k 7.4 M ± 9.7 M 119 k ± 97 k 38 k ± 32 k
  Newbler 18 0.9B ± 0.9B 87 k ± 117 k 2.1 M ± 2.3 M 133 k ± 157 k 34 k ± 27 k