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Table 4 List of top three most used assembly programs for Metazoa (Year < 2016)

From: Shared data science infrastructure for genomics data

Kingdom

Program Name

species

Total length

Scaffold-count

ScaffoldN50

ContigCount

ContigN50

Metazoa

SOAPdenovo

98

1.2B ± 0.7B

40 k ± 38 k

4.5 M ± 13 M

116 k ± 79 k

42 k ± 48 k

 

AllPaths

54

1.5B ± 1.1B

11 k ± 13 k

7.4 M ± 9.7 M

119 k ± 97 k

38 k ± 32 k

 

Newbler

18

0.9B ± 0.9B

87 k ± 117 k

2.1 M ± 2.3 M

133 k ± 157 k

34 k ± 27 k

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BMC Bioinformatics

ISSN: 1471-2105

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