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Fig. 28 | BMC Bioinformatics

Fig. 28

From: Visualization methods for differential expression analysis

Fig. 28

Example standardized litre plots for genes that were added as liver-specific DEGs after TMM normalization. Standardized litre plots for the nine genes with the lowest FDR values out of the 317 genes that were in the first cluster (Fig. 20) from genes that were added as liver-specific DEGs after TMM normalization. We can quickly determine that the pink profiles in this figure show patterns more akin to differential expression than the red profiles in Fig. 27. That is, the overlaid pink points deviate more from the x=y line in a tight cluster than the overlaid red points. At the same time, the overlaid pink points here show patterns less akin to differential expression than the purple (Fig. 25) and orange (Fig. 26) points. In sum, the standardized litre plots again place the pink gene profiles as an intermediate

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