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Table 9 Comparison of correlated targets between miRCancerdb and miRFA on mRNA level. KEGG genes refer to genes included in KEGG pathway pancreatic cancer

From: miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer

miRCancerdb

miRFA

Input

Cor mRNA

KEGG genes

Percentage (%)

Input

Cor mRNA

KEGG genes

Percentage (%)

hsa-mir-144

284

1

0.4

hsa-miR-144-3p

127

19

15.0

hsa-mir-106b

458

6

1.3

hsa-miR-106b-5p

2005

14

0.7

hsa-mir-451a

0

NA

NA

hsa-miR-451a

29

0

0

hsa-mir-101

0

NA

NA

hsa-miR-101-3p

713

5

0.7

hsa-mir-26a

0

NA

NA

hsa-miR-26a-5p

508

0

0

hsa-mir-574

0

NA

NA

hsa-miR-574-3p

156

2

1.3

hsa-mir-885

0

NA

NA

hsa-miR-885-5p

1642

12

0.7

hsa-mir-130b

277

3

1.1

hsa-miR-130b-3p

333

3

0.9

hsa-mir-34a

176

2

1.1

hsa-miR-34a-5p

1774

10

0.6

hsa-mir-24

0

NA

NA

hsa-miR-24-3p

2179

15

0.7

hsa-mir-22

261

4

1.5

hsa-miR-22-5p

977

8

0.8

hsa-let-7d

443

5

1.1

hsa-let-7d-3p

28

0

0

hsa-mir-197

57

0

0

hsa-miR-197-3p

7

0

0

hsa-mir-423

0

NA

NA

hsa-miR-423-3p

288

2

0.7

hsa-mir-122

50

0

0

hsa-miR-122-5p

3

0

0

  1. Cor mRNA = number of correlated miRNA – targets on mRNA level, KEGG genes = number of genes associated to KEGG pathway hsa05212 pancreatic cancer, percentage = percentage of KEGG genes compared to total number of correlated targets, NA = not available