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Fig. 2 | BMC Bioinformatics

Fig. 2

From: JPhyloIO: a Java library for event-based reading and writing of different phylogenetic file formats through a common interface

Fig. 2

UML class diagram showing the relation between JPhyloIO and an application based on it. All readers and writers implement a common interface to be easily exchangeable in the application. Event readers produce a sequence of events (see Fig. 1) processed by an application reader class that acts as an adapter between JPhyloIO and the application data model. Conversely, a set of data adapter implementations of the application allows the JPhyloIO writers to access the data. Writing needs a slightly more complex architecture than reading, because writers need to access that data in different orders depending on the target format. To achieve this, a set of data adapters (see Fig. 5 For details) is necessary, each providing a subsequence of the whole event stream modelling a document

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BMC Bioinformatics

ISSN: 1471-2105

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