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Fig. 8 | BMC Bioinformatics

Fig. 8

From: Sibe: a computation tool to apply protein sequence statistics to predict folding and design in silico

Fig. 8

Comparison of models predicted by Sibe (green) to the crystal structures (red). The models accurately recapitulate the structural details of the named proteins. The root-mean-square deviation (RMSD) of each protein was computed by PyMOL software [47] as shown, and the TM-scores are as follows: a YwlE (PDB ID: 1ZGG, RMSD 2.18Å, TM-score 0.76), b the flagellar capping protein (PDB ID: 5FHY, RMSD 3.16Å, TM-score 0.64), c the E. coli MCE protein MlaD (free modeling target in CASP12, PDB ID: 5UW2, RMSD 1.50Å, TM-score 0.80)

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