Tools | DynOVis | Cytoscape | DyNet | CyAnimator | DyNetViewer |
---|---|---|---|---|---|
Platform | web | Standalone Java application | Cytoscape plugin | Cytoscape plugin | Cytoscape plugin |
Input Network | List of interactions, Adjacency matrix, .sif file | List of interactions, Adjacency matrix, .sif file, URL or database | Cytoscape input types + 2 equal networks | Cytoscape input | Cytoscape input |
Input data | Text file, CSV file, excel workbook | Text file, CSV file, Excel workbook, URL or database | Text file, CSV file, Excel workbook, URL or database | Text file, CSV file, Excel workbook, URL or database | Text file |
Built-in database | Yes | No | No | No | No |
Network layout | Force directed layout | Multiple different layouts | Cytoscape Layouts | Cytoscape Layouts | Cytoscape Layouts |
Weighted edge visualization | No | Yes | Yes | Yes (from Cytoscape Core function) | No |
Dynamic node expression | Yes | No | Yes | Yes | No |
Dynamic node interactions | Yes | No | Yes | No | Yes |
3D visualization | Yes | No | No | No | No |
2D Line graph expression values | Yes | No | No | No | No |
Pathway histogram | Yes | No | No | No | No |