Magic-BLAST, an accurate RNA-seq aligner for long and short reads

BMC Bioinformatics

Table 2 Datasets used for analysis

Name	Type	Number of Reads	Average read length (bases)	Range of read lengths (bases)	Accession
iRefSeq	Real	45,108	3427	147–109224	N/A
PacBio	Real	8,285	1854	710–2703	SRR5009494
Roche	Real	416,045	348	36–808	SRR899420
Illumina 101 + 101	Real	109 million	202	202–202	SRR534301
Illumina 250 + 250	Real	23.3 million	500	500–500	SRR5438850
Illumina 300 + 300	Real	16.5 million	600	600–600	SRR5437876
PacBio Brain	Real	264,100	1323	46–6116	SRR5189652
PacBio testes	Real	408,801	1307	42–7359	SRR5189667
Human T1	Simulated	10 million	200	200–200	N/A
Human T2	Simulated	10 million	200	200–200	N/A
Human T3	Simulated	10 million	200	200–200	N/A
Malaria T1	Simulated	10 million	200	200–200	N/A
Malaria T2	Simulated	10 million	200	200–200	N/A
Malaria T3	Simulated	10 million	200	200–200	N/A

ISSN: 1471-2105