From: Selection of microbial biomarkers with genetic algorithm and principal component analysis
Dataset for creating PCA | High contribution variables (high coefficients in the corresponding PC) included in the most selected components | |||||
---|---|---|---|---|---|---|
Comp1 | Comp2 | Comp3 | Comp4 | Comp5 | Comp6 | |
Whole (PC1, PC7, PC2, PC27, PC11, PC15) | Prausnitzii–a | Gnavus+ | Eutactus+a | Moorei– | Eggerthii–a | Zeae+a |
Eutactus–a | Faecis–a | Prausnitzii+a | Obeum– | Dispar–a | Gnavus– | |
Formicigenerans–a | Copri+ | Aerofaciens– | Lenta+a | Adolescentis+ | Stutzeri+a | |
Catus–a | Muciniphila–a | Catus– | Animalis– | Mucilaginosa–a | Bromii+a | |
Faecis–a | Adolescentis–a | Adolescentis–` | Torques– | Aerofaciens+ | Fragilis+a | |
Obesity (PC14, PC18, PC2, PC4, PC19, PC16) | Eutactus–a | Uniformis+ | Dolichum– | Producta– | Caccae+a | Formicigenerans+a |
Bromii+ | Catus–a | Lenta– | Prausnitzii+a | Parainfluenzae+a | Bromii– | |
Adolescents–a | Dispar+ | Aerofaciens+a | Aerofaciens– | Formicigenerans+a | Distasonis– | |
Formicigenerans+ | Faecis+ | Producta– | Fragilis– | Adolescentis– | Eutactus+a | |
Producta–a | Distasonis–a | Gnavus– | Faecis+a | Dispar– | Perfringens+a | |
Healthy (PC1, PC34, PC23, PC28, PC3, PC5) | Prausnitzii–a | Stutzeri–a | Callidus–a | Ovatus– | Copri+ | Copri+a |
Eutactus–a | Zeae+ | Moorei+ | Longum+a | Muciniphila–a | Muciniphila+a | |
Catus–a | Gnavus+ | Formigenes+ | Distasonis+a | Formigenes–a | Prausnitzii– | |
Formicigenerans–a | Dispar+ | Prausnitzii+ | Fragilis– | Catus+ | Formigenes+a | |
Faecis–a | Lenta–a | Catus–a | Aerofaciens– | Biforme+ | Eutactus+a |