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Table 1 Kidney gene lists

From: An equivalence approach to the integrative analysis of feature lists

PBT

Size

PBT Name

Biological Description

ENDAT

114

Endothelium-associated transcripts

Microcirculation response to injury

IRITD3

313

Injury- and repair-induced transcripts day 3

Active injury–repair response: ’injury-up’ Increased in isografts peaking day 3

IRITD5

221

Injury- and repair-induced transcripts day 5

Active injury–repair response: ’injury-up’ Increased in isografts peaking day 5

KT1

574

Kidney transcripts—set 1

Active injury–repair response: ’injury-down’ Parenchymal transcripts

KT1.1

119

Kidney transcripts - Set 1.1

Humanized mouse kidney selective transcripts reduced >90% in day 21 mouse allografts

  1. Pathogenesis-based transcript sets or “PBTs”. The lists have been selected from the datasets available in the file “PBTs_all_affy” downloaded from the url: https://www.ualberta.ca/medicine/institutes-centres-groups/atagc/research/gene-lists. Only lists with more than 100 transcripts have been retained. Transcript names have been converted from probeset identifiers into Entrez identifiers. Given that several probesets are associated to the same Entrez ID the final gene lists are usually shorter than transcript lists. Since the file has been downloaded the web page has changed and this file is not available anymore, although new version of the file can be found in the site