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Fig. 2 | BMC Bioinformatics

Fig. 2

From: A model of pulldown alignments from SssI-treated DNA improves DNA methylation prediction

Fig. 2

Determining the pulldown fragment length distribution. Pulldown efficiency among read alignments with only 1 CpG within 250 bp downstream as a function of CpG position (with respect to the 5-end). Pulldown efficiency decreases around the CpG position corresponding to the average sequenced fragment length since the CpG represented in the genome is no longer likely to be contained on the read that aligned upstream. Fit to error function (red) is shown on empirical data (blue)

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