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Table 3 Run time for QC tools with parallel architecture using the test RNA-seq dataset

From: FQStat: a parallel architecture for very high-speed assessment of sequencing quality metrics

Time (sec)

Resource\Tool

FQStat

FaQCs

NGS QC Box

NGS QC ToolKit

RNA-QC-Chain

ClinQC

140 cores, 768 GB memory

1811

13,519

1560

13,051

8273

39,270

16 cores, 128 GB memory

6272

18,200

3668

62,371

15,980

94,882