From: Measuring similarity between gene interaction profiles
Similarity measure | Braun-Blanquet | Maryland Bridge | Ochiai | Pearson |
---|---|---|---|---|
Similarity threshold applied to retain ~ā20,000 edges in the network | 0.16 | 0.18 | 0.20 | 0.15 |
Nodes (genes) in the network / nodes (genes) in the giant connected component | 3427 / 3303 | 3610 / 3587 | 3385 / 3321 | 4038 / 3956 |
Edges in the network / edges in the giant connected component | 20,020 / 19,943 | 20,065 / 20,052 | 20,067 / 20,032 | 20,016 / 19,967 |
Unique genes in modules / percentage of all genes in respective giant connected component | 2072 / 62.7 | 725 / 20.2 | 1519 / 45.7 | 3072 / 77.6 |
Number of modules / unique genes per module | 682 / 3.04 | 408 / 1.78 | 516 / 2.94 | 1446 / 2.12 |
Biological Homogeneity Index | 0.12 | 0.27 | 0.16 | 0.33 |
Percentage of uncharacterized genes / p-value / clusters with uncharacterized genes | 36 / 10ā38 / 38 | 17 / 10ā11 / 2 | 36 / 10āā22 / 30 | 26 / 10āā3 / 35 |
Annotated modules of Type 1 / Type 2 | 36 / 409 | 64 / 119 | 48 / 309 | 279 / 568 |