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Table 1 Number of drugs in CMAP dataset which yielded gene differential expression results by each method

From: Influence of batch effect correction methods on drug induced differential gene expression profiles

Method Number of results
limma+ Null 1288 (98.4%)
limma+1PC 1288 (98.4%)
limma+2PCs 1271 (97.1%)
limma+3PCs 1270 (97.0%)
limma+4PCs 1236 (94.4%)
limma + Batch id 1288 (98.4%)
LEAPP 1254 (95.8%)
  1. Note: percentage out of 1309 drugs in parentheses