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Table 4 Simulation scenarios

From: Influence of batch effect correction methods on drug induced differential gene expression profiles

Scenario name Batch effect size parameter FDR threshold Batch allocation difference
No batch effect 0 0.1 0
Medium batch effect, balanced design 2 0.1 0
Large batch effect, balanced design 4 0.1 0
Medium batch effect, unbalanced design 2 0.1 0.3
Medium batch effect, balanced design, larger FDR threshold 2 0.2 0