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Fig. 5 | BMC Bioinformatics

Fig. 5

From: CAGEfightR: analysis of 5′-end data using R/Bioconductor

Fig. 5

Analysis of PRO-Cap data. a: Annotation of TCs and enhancer candidates from the PRO-Cap set. Organized as Fig. 2b, but with enhancer candidates added, as indicated by transparency. b: Sequence logo of the core promoter sequence around TCs aligned on TC peaks. c: Chromatin modifications at TCs and enhancer candidates from the PRO-Cap set. Average signal of ChIP-Seq or DNase-Seq of 10,000 randomly sampled enhancer (left) and TCs (right). X-axis indicates distance to TC peak or enhancer candidate midpoint. Y-axes shows average ChIP-Seq or DNase-Seq signal as indicated by color. d: Example of intergenic enhancer candidate from the PRO-Cap set. Figure organised as Fig. 1b-c

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