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Table 1 Examples of popular 5′-end methods

From: CAGEfightR: analysis of 5′-end data using R/Bioconductor

Technology

Acronym

RNA state

Ref.

Cap Analysis of Gene Expression

CAGE

Steady-tate

[5]

Nano CAGE

NanoCAGE

Steady-state

[6]

Super Low Input Carrier CAGE

SLIC-CAGE

Steady-state

[7]

no-Amplification non-Tagging CAGE

nAnT-iCAGE

Steady-state

[8]

Transcription Start Site Sequencing

TSS-Seq

Steady-state

[9]

RNA Annotation and Mapping of Promoters for the Analysis of Gene Expression

RAMPAGE

Steady-state

[10]

Single-cell Tagged Reverse transcription

STRT

Steady-state

[11]

Precision Nuclear Run-on Sequencing for RNA Polymerase II Start Sites

PRO-Cap

Nascent

[12]

5′ Global Run-on Sequencing

GRO-Cap/5′ GRO-Seq

Nascent

[13]