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Table 1 Main results of implementing the semi-automated method in merlin’s EC number annotation tool using three complete protein sequences as test cases, one of each single-different organism

From: SamPler – a novel method for selecting parameters for gene functional annotation routines

Organism S. termophilus L. helveticus N. europaea
α 0.4 0.7 0.2
Upper Threshold 0.6 0.8 0.8
Lower Threshold 0.2 0.3 0.1
Genes to Be Curated 331 264 624
% for curation 38% 36% 56%
Accuracy 0.691 0.753 0.591
Curation ratio score 1.8 2.11 1.05
Sample size 50 (5.8%) 50 (6.7%) 60 (5.4%)
Potentially metabolic 862 741 1114
Genome 1716 1685 2462