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Table 1 Main results of implementing the semi-automated method in merlin’s EC number annotation tool using three complete protein sequences as test cases, one of each single-different organism

From: SamPler – a novel method for selecting parameters for gene functional annotation routines

Organism

S. termophilus

L. helveticus

N. europaea

α

0.4

0.7

0.2

Upper Threshold

0.6

0.8

0.8

Lower Threshold

0.2

0.3

0.1

Genes to Be Curated

331

264

624

% for curation

38%

36%

56%

Accuracy

0.691

0.753

0.591

Curation ratio score

1.8

2.11

1.05

Sample size

50 (5.8%)

50 (6.7%)

60 (5.4%)

Potentially metabolic

862

741

1114

Genome

1716

1685

2462