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Table 2 Performance comparison of gene prediction tools on A. thaliana with the transition probabilities trained by computing maximum likelihood estimation

From: GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient

Program AUGUSTUSGPRED-GC
   lowT=0.47lowT=0.30lowT=0.30lowT=0.60
   highT=0.63highT=0.60highT=0.70highT=0.70
BaseSen0.9680.9600.9720.9720.972
levelSpe0.7080.7110.7090.7090.709
ExonSen0.8700.8510.8820.8820.882
levelSpe0.6660.6740.6770.6770.677
GeneSen0.5540.5600.5650.5650.565
levelSpe0.3520.3460.3510.3510.351
Time(Sec.) 40.351.157.756.457.7
  1. The two tools have comparable performance. Time (Sec.) is the running time of AUGUSTUS and GPRED-GC under different sets of thresholds on A. thaliana dataset in seconds. Note: The running time represents the total running time of prediction
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