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Table 4 Performance comparison of gene prediction on the first O. sativa data set with the transition probabilities trained using maximum likelihood estimation

From: GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient

Program

 

AUGUSTUS

GPRED-GC

   

lowT=0.39

lowT=0.35

lowT=0.50

lowT=0.40

   

highT=0.61

highT=0.61

highT=0.60

highT=0.60

Base

Sen

0.839

0.850

0.847

0.923

0.847

level

Spe

0.892

0.898

0.898

0.876

0.899

Exon

Sen

0.613

0.633

0.62

0.707

0.629

level

Spe

0.694

0.732

0.716

0.670

0.727

Gene

Sen

0.260

0.253

0.253

0.267

0.267

level

Spe

0.235

0.235

0.235

0.227

0.247

Time(Sec.)

 

37.6

57.4

57.8

56.0

57.4

  1. Bold number indicates that sensitivity or specificity of GPRED-GC are higher than those of AUGUSTUS. Time (Sec.) is the running time of AUGUSTUS and GPRED-GC under different sets of thresholds on the first O. sativa dataset in seconds. Note: The running time shows the total running time of prediction