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Table 4 Performance comparison of gene prediction on the first O. sativa data set with the transition probabilities trained using maximum likelihood estimation

From: GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient

Program AUGUSTUSGPRED-GC
   lowT=0.39lowT=0.35lowT=0.50lowT=0.40
   highT=0.61highT=0.61highT=0.60highT=0.60
BaseSen0.8390.8500.8470.9230.847
levelSpe0.8920.8980.8980.8760.899
ExonSen0.6130.6330.620.7070.629
levelSpe0.6940.7320.7160.6700.727
GeneSen0.2600.2530.2530.2670.267
levelSpe0.2350.2350.2350.2270.247
Time(Sec.) 37.657.457.856.057.4
  1. Bold number indicates that sensitivity or specificity of GPRED-GC are higher than those of AUGUSTUS. Time (Sec.) is the running time of AUGUSTUS and GPRED-GC under different sets of thresholds on the first O. sativa dataset in seconds. Note: The running time shows the total running time of prediction