Table 5 Performance comparison of gene prediction tools on the second O. sativa data set with the transition probabilities divided into three equal parts
From: GPRED-GC: a Gene PREDiction model accounting for 5 ′- 3′ GC gradient
Program | AUGUSTUS | GPRED-GC | ||||
|---|---|---|---|---|---|---|
lowT=0.31 | lowT=0.49 | lowT=0.30 | lowT=0.60 | |||
highT=0.52 | highT=0.52 | highT=0.50 | highT=0.70 | |||
Base | Sen | 0.859 | 0.942 | 0.950 | 0.937 | 0.840 |
level | Spe | 0.619 | 0.607 | 0.597 | 0.590 | 0.622 |
Exon | Sen | 0.670 | 0.768 | 0.781 | 0.748 | 0.630 |
level | Spe | 0.552 | 0.546 | 0.553 | 0.520 | 0.559 |
Gene | Sen | 0.355 | 0.400 | 0.400 | 0.355 | 0.365 |
level | Spe | 0.191 | 0.211 | 0.205 | 0.177 | 0.204 |
Time(Sec.) | 48.2 | 60.2 | 60.8 | 60.8 | 59.0 | |