Skip to main content

Table 3 The prediction results by our method, ZRANK+FiberDock and ClusPro on Benchmark v4.0

From: Identifying protein-protein interface via a novel multi-scale local sequence and structural representation

Subseta

No. of cases

Our Method

ZRANK+FiberDock

ClusPro

  

Irmsd

Fnat

Fnon−nat

Irmsd

Fnat

Fnon−nat

Irmsd

Fnat

Fnon−nat

Rigid

123

2.86

69%

35%

3.31

56%

49%

3.33

55%

51%

Medium

29

3.35

59%

39%

4.46

39%

59%

4.71

30%

69%

Difficult

24

5.39

36%

58%

6.18

28%

67%

6.53

21%

77%

Overall

176

3.28

63%

39%

3.89

49%

53%

3.99

46%

58%

  1. aSubset is based on the magnitude of conformational change after binding