Skip to main content

Table 3 The prediction results by our method, ZRANK+FiberDock and ClusPro on Benchmark v4.0

From: Identifying protein-protein interface via a novel multi-scale local sequence and structural representation

Subseta No. of cases Our Method ZRANK+FiberDock ClusPro
   Irmsd Fnat Fnonnat Irmsd Fnat Fnonnat Irmsd Fnat Fnonnat
Rigid 123 2.86 69% 35% 3.31 56% 49% 3.33 55% 51%
Medium 29 3.35 59% 39% 4.46 39% 59% 4.71 30% 69%
Difficult 24 5.39 36% 58% 6.18 28% 67% 6.53 21% 77%
Overall 176 3.28 63% 39% 3.89 49% 53% 3.99 46% 58%
  1. aSubset is based on the magnitude of conformational change after binding