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Table 3 SNPs identified for the resistance to penicillin (PEN) by DNP-AAP

From: Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

ID Range

ID

AAP

Genes

Annotations

Known

 

38424

0.344

NGK_2469

conserved hypothetical protein

 
 

33601

0.342

NGK_2170

outer membrane preprotein PIIc

 
 

18799

0.330

gyrA

DNA gyrase subunit A

 
 

29502

0.322

NGK_1906

monofunctional biosynthetic peptidoglycan

 
    

transglycosylase

 
 

29504

0.251

NGK_1906

monofunctional biosynthetic peptidoglycan

 
    

transglycosylase

 

[2749,2763]

2755

0.236

ponA

penicillin-binding protein 1A

✓

 

35095

0.219

NGK_2270

adhesin MafA

 
 

10120

0.213

NGK_0679

putative phage associated protein

 
 

40335

0.204

 

intergenic between NGK_2581 and NGK_2582 ∗

 
 

6817

0.203

NGK_0423

23S rRNA pseudo-uridine 1911/1915/1917

 
    

synthase

 
  1. Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP
  2. *NGK_2581: Putative hemoglobin receptor component precursor HpuA; NGK_2582: Conserved hypothetical protein
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BMC Bioinformatics

ISSN: 1471-2105

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