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Fig. 4 | BMC Bioinformatics

Fig. 4

From: Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging

Fig. 4

Example extraction and montage CLI commands. a CLI commands define slices as names (where relevant) or as lists and ranges of indexes to extract raw, processed, or object image data. b Resulting TIFF files are ImageJ compatible for blending and visualization, like the example shown with human T cells labeled as CD3 (green), DAPI (blue), nuclei boundaries (cyan), and cell boundaries (red)

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