Fig. 5
From: Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging
Cytokit Explorer screenshot (see screencast for animated version) showing a CODEX sample imaged at 20x. a 1D or 2D plots of expression, morphological, or graphical cell features support box and free-hand gating. b Custom filtering, to ignore a central photobleached region of cells in this case, or summarizations are applied immediately. c Single cell images match current gate and selected channel display settings and can also be buffered onto the page as tiles are selected, or across the entire image grid (not shown). d Gated cell population projected onto selected tile image with current display settings