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Table 4 Example of tumor samples and gene predictions (α = 1.0)

From: Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach

Tumor sample name Tumor location alpha = 1.0 STRING (Top 5 Predicted Genes) alpha = 1.0 BioGRID (Top 5 predicted genes)
TCGA-CV-A6JN-01 Upper aerodigestive tract RRBP1 SPRY2 ZMAT4 HOXA2 IRS4 HOXA2 SPRY2 IRS4 ZMAT4 RRBP1
TCGA-SX-A71W-01 Kidney EPM2AIP1 C4orf26 TM4SF1 DDAH2 FBXO2 UBC APP PLVAP HNRNPA1 ALB
TCGA-38-7271-01 Lung HOXC4HOXA3HOXB3HOXB5 HOXD3 HOXC4 APP PRMT6 WHSC1L1 HOXB5
TCGA-HP-A5MZ-01 Liver GNE GJC2 LPPR2 ACACB CLASP1 CLASP1 LPPR2 GNE GJC2 ALB
TCGA-D5-6541-01 Large intestine EDARADD AGRN ZMAT4 MAGI2 LAMA4 EDARADD MAGI2 LAMA4PCDHGC3ZMAT4
TCGA-QU-A6IM-01 Prostrate SRI ZIC2 ZIC5 LPIN1 IGF2BP1 SRI ZIC2 NAGK POU5F1 TEAD2
TCGA-YC-A8S6-01 Urinary tract PRELID1 SRM LSM4 POLR2E CCT7 PRELID1 CRYAB TNFRSF1A STOML2 APP
TCGA-A7-A5ZX-01 Breast C11orf53 PCDH17 KIFC2 ZFR2 PON3 PCDH17 KIFC2 ZFR2 MAPK8IP2 ILF2
TCGA-EO-A3KW-01 Endometrium WT1-AS C20orf96 NLRP10 TP53I13 OR4D6 PCDHGB1 APP PCDHA10 PCDHGA5 HSPB2
TCGA-DJ-A3VE-01 Thyroid MSLN ZMAT3 TNFRSF1A SCNN1A MTA1 RDH5 MSLN ZMAT3 TNFRSF1A DUSP6