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Table 6 Comparison between added and removed annotations in FunCat 2007 and FunCat 2018 per level

From: Machine learning for discovering missing or wrong protein function annotations

Dataset

 

Number of annotations added

Number of annotations removed

Cellcycle

Train

1083/1875/1585/654/199/6

278/285/221/115/26/1

 

Test

794/1414/1231/475/137/8

200/209/160/92/29/1

 

Valid

585/1031/873/359/104/4

117/118/101/55/15/1

Church

Train

1087/1881/1589/657/201/6

277/284/220/114/25/1

 

Test

802/1431/1234/475/137/9

204/218/164/93/29/1

 

Valid

581/1022/867/357/104/4

116/117/100/55/15/1

Derisi

Train

1060/1841/1552/644/192/6

266/268/213/112/24/1

 

Test

799/1431/1246/477/139/8

201/209/161/92/29/1

 

Valid

581/1024/874/359/104/4

116/117/100/55/15/1

Expr

Train

1088/1885/1590/657/201/6

278/285/221/115/26/1

 

Test

801/1428/1235/477/138/9

201/210/161/92/29/1

 

Valid

588/1034/874/359/104/4

117/118/101/55/15/1

Eisen

Train

756/1369/1108/458/144/4

167/181/140/79/17/1

 

Test

562/1028/856/318/97/6

131/137/112/68/23/1

 

Valid

353/632/503/190/47/1

71/79/67/42/12/1

Gasch1

Train

1087/1881/1589/657/201/6

278/285/221/115/26/1

 

Test

799/1428/1235/477/138/9

199/208/160/92/29/1

 

Valid

582/1023/869/358/104/4

116/117/100/55/15/1

Gasch2

Train

1088/1885/1590/657/201/6

278/285/221/115/26/1

 

Test

801/1428/1235/477/138/9

201/210/161/92/29/1

 

Valid

588/1034/874/359/104/4

117/118/101/55/15/1

Hom

Train

1130/1885/1600/656/201/6

329/296/230/117/25/1

 

Test

842/1447/1251/479/138/9

230/208/160/92/29/1

 

Valid

230/208/160/92/29/1

142/117/100/55/15/1

Pheno

Train

450/780/680/274/90/3

110/113/93/44/10/1

 

Test

345/642/572/215/54/5

101/98/66/30/6/0

 

Valid

253/448/419/171/56/0

47/39/41/22/4/1

Spo

Train

1056/1833/1543/638/192/6

265/268/213/112/24/1

 

Test

793/1413/1233/475/137/8

199/208/160/92/29/1

 

Valid

573/1008/858/353/103/4

115/117/100/55/15/1

Seq

Train

1145/1909/1616/664/205/6

335/303/236/120/26/1

 

Test

849/1456/1252/479/138/9

235/213/163/92/29/1

 

Valid

621/1045/881/362/106/4

143/118/101/55/15/1

Struc

Train

1112/1909/1614/664/205/6

300/298/232/119/26/1

 

Test

826/1449/1250/478/138/9

214/212/162/92/29/1

 

Valid

604/1045/881/360/106/4

126/118/101/55/15/1

Mean

Train

1011/1744/1471/606/186/5

263/262/205/106/23/1

 

Test

751/1332/1152/441/127/8

193/195/149/84/26/0

 

Valid

511/879/744/306/89/3

111/107/92/51/13/1