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Table 6 Comparison between added and removed annotations in FunCat 2007 and FunCat 2018 per level

From: Machine learning for discovering missing or wrong protein function annotations

Dataset   Number of annotations added Number of annotations removed
Cellcycle Train 1083/1875/1585/654/199/6 278/285/221/115/26/1
  Test 794/1414/1231/475/137/8 200/209/160/92/29/1
  Valid 585/1031/873/359/104/4 117/118/101/55/15/1
Church Train 1087/1881/1589/657/201/6 277/284/220/114/25/1
  Test 802/1431/1234/475/137/9 204/218/164/93/29/1
  Valid 581/1022/867/357/104/4 116/117/100/55/15/1
Derisi Train 1060/1841/1552/644/192/6 266/268/213/112/24/1
  Test 799/1431/1246/477/139/8 201/209/161/92/29/1
  Valid 581/1024/874/359/104/4 116/117/100/55/15/1
Expr Train 1088/1885/1590/657/201/6 278/285/221/115/26/1
  Test 801/1428/1235/477/138/9 201/210/161/92/29/1
  Valid 588/1034/874/359/104/4 117/118/101/55/15/1
Eisen Train 756/1369/1108/458/144/4 167/181/140/79/17/1
  Test 562/1028/856/318/97/6 131/137/112/68/23/1
  Valid 353/632/503/190/47/1 71/79/67/42/12/1
Gasch1 Train 1087/1881/1589/657/201/6 278/285/221/115/26/1
  Test 799/1428/1235/477/138/9 199/208/160/92/29/1
  Valid 582/1023/869/358/104/4 116/117/100/55/15/1
Gasch2 Train 1088/1885/1590/657/201/6 278/285/221/115/26/1
  Test 801/1428/1235/477/138/9 201/210/161/92/29/1
  Valid 588/1034/874/359/104/4 117/118/101/55/15/1
Hom Train 1130/1885/1600/656/201/6 329/296/230/117/25/1
  Test 842/1447/1251/479/138/9 230/208/160/92/29/1
  Valid 230/208/160/92/29/1 142/117/100/55/15/1
Pheno Train 450/780/680/274/90/3 110/113/93/44/10/1
  Test 345/642/572/215/54/5 101/98/66/30/6/0
  Valid 253/448/419/171/56/0 47/39/41/22/4/1
Spo Train 1056/1833/1543/638/192/6 265/268/213/112/24/1
  Test 793/1413/1233/475/137/8 199/208/160/92/29/1
  Valid 573/1008/858/353/103/4 115/117/100/55/15/1
Seq Train 1145/1909/1616/664/205/6 335/303/236/120/26/1
  Test 849/1456/1252/479/138/9 235/213/163/92/29/1
  Valid 621/1045/881/362/106/4 143/118/101/55/15/1
Struc Train 1112/1909/1614/664/205/6 300/298/232/119/26/1
  Test 826/1449/1250/478/138/9 214/212/162/92/29/1
  Valid 604/1045/881/360/106/4 126/118/101/55/15/1
Mean Train 1011/1744/1471/606/186/5 263/262/205/106/23/1
  Test 751/1332/1152/441/127/8 193/195/149/84/26/0
  Valid 511/879/744/306/89/3 111/107/92/51/13/1