Table 9 Comparison between the number of annotations per level in Gene Ontology 2007 and Gene Ontology 2018
From: Machine learning for discovering missing or wrong protein function annotations
| Â | Â | Number of annotations per level - 2007 | Number of annotations per level - 2018 |
|---|---|---|---|
Cellcycle | Train | 8503/10785/10322/7639/6096/3726/2390/1095/553/243/90/24/13/0/0 | 10453/18179/19093/17826/14561/9491/6155/4503/2565/1532/896/398/110/11/0 |
| Â | Test | 6933/8801/8476/6284/5030/3040/1964/887/447/200/81/19/7/0/0 | 9663/15948/16855/15546/12833/8367/5442/3827/2139/1256/771/397/124/12/3 |
| Â | Valid | 4350/5518/5277/3889/3097/1773/1145/536/270/123/52/10/5/0/0 | 6340/10347/10877/9898/8003/5108/3353/2396/1329/830/488/214/82/8/1 |
Church | Train | 8508/10794/10331/7645/6102/3727/2387/1091/552/243/90/24/13/0/0 | 12015/20133/20979/19244/15615/10166/6526/4756/2691/1592/931/412/118/12/0 |
| Â | Test | 6935/8798/8469/6279/5025/3035/1963/889/447/200/81/19/7/0/0 | 9596/15900/16911/15534/12676/8274/5347/3798/2119/1247/755/382/119/13/3 |
| Â | Valid | 4332/5492/5253/3869/3088/1765/1139/534/268/121/50/8/4/0/0 | 6262/10344/10907/9891/7935/5038/3327/2440/1368/847/485/212/81/8/1 |
Derisi | Train | 8411/10679/10219/7565/6043/3689/2373/1083/549/242/90/24/13/0/0 | 11873/19951/20719/18965/15482/10070/6528/4684/2655/1566/907/402/116/11/0 |
| Â | Test | 6889/8755/8464/6274/5016/3034/1965/890/448/200/81/19/7/0/0 | 9622/15942/16865/15572/12852/8389/5465/3837/2149/1262/779/400/124/12/3 |
| Â | Valid | 4335/5497/5263/3882/3092/1766/1141/541/272/123/51/9/4/0/0 | 6289/10283/10850/9875/7982/5096/3336/2406/1336/833/487/213/80/8/1 |
Expr | Train | 8552/10839/10373/7676/6127/3739/2393/1096/553/243/90/24/13/0/0 | 12078/20305/21111/19395/15764/10236/6605/4764/2718/1586/922/413/117/11/0 |
| Â | Test | 6990/8872/8532/6325/5062/3052/1972/890/447/200/81/19/7/0/0 | 9736/16109/17120/15796/12950/8452/5487/3870/2178/1293/788/405/133/16/4 |
| Â | Valid | 4356/5523/5282/3892/3100/1778/1146/537/271/123/52/10/5/0/0 | 6306/10359/10892/9928/8062/5161/3360/2414/1349/854/514/228/88/8/1 |
Eisen | Train | 5999/7650/7313/5409/4408/2758/1771/830/418/184/72/22/13/0/0 | 8017/13544/14278/13196/10820/7090/4607/3381/1923/1173/696/310/86/11/0 |
| Â | Test | 4856/6203/5969/4457/3579/2210/1452/637/320/148/56/17/7/0/0 | 6418/10714/11509/10701/8787/5791/3768/2709/1517/898/529/273/91/11/3 |
| Â | Valid | 2980/3797/3601/2663/2145/1258/807/387/198/89/40/5/3/0/0 | 4085/6748/7181/6585/5442/3548/2290/1663/924/582/348/161/69/8/1 |
Gasch1 | Train | 8528/10814/10349/7658/6113/3732/2389/1092/552/243/90/24/13/0/0 | 12061/20214/21005/19233/15663/10208/6599/4733/2684/1582/908/403/116/11/0 |
| Â | Test | 6956/8822/8487/6292/5035/3038/1964/889/447/200/81/19/7/0/0 | 8518/13333/14027/12536/10243/6619/4280/2961/1644/950/554/275/91/11/3 |
| Â | Valid | 4341/5504/5265/3877/3092/1768/1140/534/268/121/50/8/4/0/0 | 6329/10336/10864/9887/7997/5102/3346/2394/1327/828/486/211/80/8/1 |
Gasch2 | Train | 8552/10839/10373/7676/6127/3739/2393/1096/553/243/90/24/13/0/0 | 12090/20284/21121/19491/15879/10398/6728/4832/2737/1617/935/423/123/14/0 |
| Â | Test | 6990/8872/8532/6325/5062/3052/1972/890/447/200/81/19/7/0/0 | 9708/16004/16957/15616/12782/8394/5459/3840/2134/1254/761/387/126/13/4 |
| Â | Valid | 4356/5523/5282/3892/3100/1778/1146/537/271/123/52/10/5/0/0 | 6306/10265/10830/9806/7974/5125/3389/2419/1346/850/494/214/83/8/1 |
Hom | Train | 8677/10965/10503/7722/6213/3749/2391/1092/554/246/90/24/13/0/0 | 12265/20926/21585/19562/16060/10447/6758/4809/2692/1582/904/399/117/11/0 |
| Â | Test | 7084/8963/8615/6349/5108/3036/1963/892/448/200/81/19/7/0/0 | 9898/16603/17421/15930/13196/8588/5593/3917/2137/1259/770/397/124/12/3 |
| Â | Valid | 4434/5605/5355/3913/3140/1765/1140/535/269/121/50/8/4/0/0 | 6461/10747/11197/10075/8198/5214/3427/2436/1326/827/486/211/80/8/1 |
Pheno | Train | 3407/4377/4224/3129/2452/1519/973/417/215/89/32/11/8/0/0 | 4876/8133/8531/7911/6424/4184/2662/1905/1087/661/407/192/59/6/0 |
| Â | Test | 3127/4000/3899/2915/2267/1398/942/428/207/101/45/13/5/0/0 | 4414/7363/7818/7229/5914/3902/2564/1869/1050/603/365/193/60/5/1 |
| Â | Valid | 1856/2357/2301/1687/1325/757/510/250/115/54/21/2/2/0/0 | 2653/4454/4708/4344/3544/2296/1506/1103/629/380/237/113/51/7/1 |
| Â | Â | Number of annotations per level - 2007 | Number of annotations per level - 2018 |
Spo | Train | 8361/10613/10158/7520/6008/3668/2359/1080/548/241/90/24/13/0/0 | 11956/20176/21045/19222/15723/10209/6545/4692/2649/1572/903/403/116/11/0 |
| Â | Test | 6842/8690/8389/6219/4977/3011/1947/883/446/200/81/19/7/0/0 | 9570/15835/16752/15450/12760/8325/5423/3809/2135/1255/771/397/124/12/3 |
| Â | Valid | 4307/5460/5226/3855/3072/1753/1133/535/268/122/51/9/4/0/0 | 6265/10235/10785/9826/7956/5074/3328/2386/1327/829/487/212/80/8/1 |
Seq | Train | 8840/11168/10688/7849/6318/3806/2424/1108/559/249/90/24/13/0/0 | 12492/21255/21931/19863/16293/10600/6845/4875/2722/1599/908/404/117/11/0 |
| Â | Test | 7203/9111/8747/6441/5189/3087/1985/895/450/201/81/19/7/0/0 | 10059/16832/17661/16126/13350/8687/5642/3965/2168/1270/774/398/124/12/3 |
| Â | Valid | 4478/5658/5405/3951/3171/1791/1155/542/274/124/52/10/5/0/0 | 6524/10820/11270/10142/8244/5251/3449/2447/1332/829/488/214/82/8/1 |
Struc | Train | 8688/10998/10540/7777/6238/3797/2418/1106/558/249/90/24/13/0/0 | 12275/20674/21445/19540/15965/10402/6723/4807/2717/1595/905/403/117/11/0 |
| Â | Test | 7071/8953/8603/6362/5105/3066/1973/892/447/200/81/19/7/0/0 | 9827/16300/17185/15794/12960/8453/5475/3872/2141/1256/766/398/128/12/3 |
| Â | Valid | 4397/5565/5318/3903/3125/1783/1150/541/273/124/52/10/5/0/0 | 6409/10520/11013/9977/8079/5156/3388/2418/1332/829/488/214/82/8/1 |
Mean | Train | 7788/9878/9462/6992/5598/3413/2186/998/504/222/82/22/12/0/0 | 11037/18647/19403/17787/14520/9458/6106/4395/2486/1471/851/380/109/10/0 |
| Â | Test | 6489/8236/7931/5876/4704/2838/1838/830/416/187/75/18/6/0/0 | 8919/14740/15590/14319/11775/7686/4995/3522/1959/1150/698/358/114/11/3 |
| Â | Valid | 4043/5124/4902/3606/2878/1644/1062/500/251/114/47/8/4/0/0 | 5852/9621/10114/9186/7451/4764/3124/2243/1243/776/457/201/78/7/1 |