Table 2 The AUCs of edgeR-robust, DESeq2, limma-voom, ELMSeq and rSeqRobust based on log-normally distributed data
DE (%) | Up (%) | edgeR | DESeq2 | voom | ELMSeq | rSeqRobust |
|---|---|---|---|---|---|---|
1 | 50 | 0.9734 | 0.9736 | 0.9786 | 0.9717 | 0.9757 |
(0.0091) | (0.009) | (0.007) | (0.0065) | (0.0064) | ||
1 | 75 | 0.954 | 0.9531 | 0.9711 | 0.9343 | 0.935 |
(0.0113) | (0.0141) | (0.0086) | (0.0153) | (0.018) | ||
1 | 100 | 0.9525 | 0.9531 | 0.9633 | 0.9476 | 0.9594 |
(0.0144) | (0.0137) | (0.0108) | (0.0151) | (0.0139) | ||
10 | 50 | 0.958 | 0.9623 | 0.9668 | 0.9573 | 0.9627 |
(0.0079) | (0.0069) | (0.0057) | (0.0069) | (0.0067) | ||
10 | 75 | 0.9707 | 0.9632 | 0.9749 | 0.964 | 0.9668 |
(0.0057) | (0.0045) | (0.004) | (0.0061) | (0.0057) | ||
10 | 100 | 0.9403 | 0.9272 | 0.9605 | 0.94 | 0.9435 |
(0.0107) | (0.0142) | (0.0077) | (0.0128) | (0.0128) | ||
30 | 50 | 0.9689 | 0.9696 | 0.974 | 0.9665 | 0.9678 |
(0.0056) | (0.0048) | (0.005) | (0.0053) | (0.0052) | ||
30 | 75 | 0.9318 | 0.9265 | 0.9458 | 0.9564 | 0.9655 |
(0.0113) | (0.0116) | (0.0096) | (0.0078) | (0.0059) | ||
30 | 100 | 0.8771 | 0.8693 | 0.8753 | 0.9372 | 0.9566 |
(0.0153) | (0.0091) | (0.0145) | (0.0149) | (0.0086) | ||
50 | 50 | 0.9466 | 0.954 | 0.9425 | 0.9557 | 0.957 |
(0.0092) | (0.0059) | (0.0087) | (0.0071) | (0.0065) | ||
50 | 75 | 0.9099 | 0.906 | 0.9145 | 0.9401 | 0.9566 |
(0.0167) | (0.0123) | (0.0178) | (0.0135) | (0.0076) | ||
50 | 100 | 0.7083 | 0.7236 | 0.7197 | 0.879 | 0.9576 |
(0.022) | (0.0291) | (0.0242) | (0.0195) | (0.0071) | ||
70 | 50 | 0.967 | 0.9655 | 0.9652 | 0.9655 | 0.969 |
(0.0039) | (0.0034) | (0.0036) | (0.0031) | (0.0021) | ||
70 | 75 | 0.8569 | 0.8351 | 0.8564 | 0.9089 | 0.9692 |
(0.0193) | (0.0161) | (0.0194) | (0.0118) | (0.0045) | ||
70 | 100 | 0.4536 | 0.5212 | 0.4893 | 0.4786 | 0.9638 |
(0.0344) | (0.0296) | (0.018) | (0.037) | (0.0082) | ||
90 | 50 | 0.953 | 0.9538 | 0.9513 | 0.9561 | 0.9512 |
(0.0064) | (0.0064) | (0.0081) | (0.0042) | (0.0049) | ||
90 | 75 | 0.7203 | 0.6918 | 0.7256 | 0.6906 | 0.9584 |
(0.0239) | (0.0177) | (0.0323) | (0.0167) | (0.0084) | ||
90 | 100 | 0.2568 | 0.506 | 0.2566 | 0.3516 | 0.8276 |
(0.0257) | (0.0265) | (0.0278) | (0.0345) | (0.0426) |