Table 7 The AUCs of edgeR-robust, DESeq2, limma-voom, ELMSeq and rSeqRobust based on negative-binomially distributed data
DE (%) | Up (%) | edgeR - robust | DESeq2 | limma - voom | ELMSeq | rSeqRobust |
|---|---|---|---|---|---|---|
1 | 50 | 0.9934 | 0.9919 | 0.9922 | 0.9942 | 0.9937 |
(0.0038) | (0.0043) | (0.0048) | (0.0039) | (0.0045) | ||
1 | 75 | 0.9933 | 0.9933 | 0.993 | 0.9953 | 0.9922 |
(0.0033) | (0.0043) | (0.0036) | (0.0032) | (0.0047) | ||
1 | 100 | 0.9882 | 0.9836 | 0.9867 | 0.9901 | 0.9891 |
(0.0046) | (0.0057) | (0.0054) | (0.0045) | (0.0047) | ||
10 | 50 | 0.9866 | 0.9892 | 0.9876 | 0.9898 | 0.9895 |
(0.0024) | (0.0021) | (0.0024) | (0.002) | (0.0019) | ||
10 | 75 | 0.9775 | 0.9803 | 0.9795 | 0.9867 | 0.9874 |
(0.0037) | (0.0044) | (0.0032) | (0.0024) | (0.0025) | ||
10 | 100 | 0.9724 | 0.9739 | 0.9788 | 0.9864 | 0.9883 |
(0.0045) | (0.0046) | (0.0035) | (0.0032) | (0.0028) | ||
30 | 50 | 0.9838 | 0.9881 | 0.9851 | 0.9874 | 0.9878 |
(0.0022) | (0.0018) | (0.0022) | (0.0017) | (0.0014) | ||
30 | 75 | 0.9568 | 0.9601 | 0.9614 | 0.9837 | 0.9868 |
(0.0058) | (0.0022) | (0.0052) | (0.0023) | (0.0015) | ||
30 | 100 | 0.8809 | 0.8902 | 0.89 | 0.9837 | 0.9898 |
(0.0171) | (0.0044) | (0.0143) | (0.0014) | (0.0013) | ||
50 | 50 | 0.982 | 0.9875 | 0.9823 | 0.9867 | 0.9869 |
(0.0022) | (0.0013) | (0.0027) | (0.0017) | (0.0016) | ||
50 | 75 | 0.9178 | 0.8977 | 0.9228 | 0.9799 | 0.986 |
(0.008) | (0.0074) | (0.0069) | (0.0015) | (0.0013) | ||
50 | 100 | 0.5817 | 0.5509 | 0.6413 | 0.9157 | 0.9923 |
(0.0345) | (0.0104) | (0.027) | (0.0026) | (0.0012) | ||
70 | 50 | 0.9811 | 0.9873 | 0.9807 | 0.9873 | 0.9871 |
(0.0026) | (0.0016) | (0.0022) | (0.0013) | (0.0014) | ||
70 | 75 | 0.7935 | 0.6559 | 0.8258 | 0.9108 | 0.986 |
(0.0348) | (0.023) | (0.0306) | (0.0061) | (0.0013) | ||
70 | 100 | 0.3529 | 0.4508 | 0.3866 | 0.3371 | 0.9865 |
(0.0082) | (0.0222) | (0.0188) | (0.003) | (0.0018) | ||
90 | 50 | 0.9842 | 0.9867 | 0.9849 | 0.987 | 0.9875 |
(0.0023) | (0.0019) | (0.0019) | (0.0015) | (0.0015) | ||
90 | 75 | 0.5017 | 0.5326 | 0.5683 | 0.4044 | 0.9864 |
(0.0238) | (0.0121) | (0.0247) | (0.0104) | (7e-04) | ||
90 | 100 | 0.3403 | 0.5145 | 0.2979 | 0.3167 | 0.9828 |
(0.0033) | (0.0092) | (0.0021) | (0.003) | (0.0012) |