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Table 8 The computational times (in seconds) of edgeR-robust, DESeq2, limma-voom, ELMSeq and rSeqRobust

From: Joint between-sample normalization and differential expression detection through ℓ0-regularized regression

n

edgeR

DESeq2

voom

ELMSeq

rSeqRobust

7

5.45

0.76

0.13

403.39

16.63

20

9.49

1.51

0.16

987.87

21.84

200

70.68

49.30

0.54

2225.95

76.93

  1. Percent of DE genes: 10%, percent of up-regulated genes among the DE genes: 50%. The least time is shown in bold
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BMC Bioinformatics

ISSN: 1471-2105

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