HTRgene: a computational method to perform the integrated analysis of multiple heterogeneous time-series data: case analysis of cold and heat stress response signaling genes in Arabidopsis

Table 2 Heterogeneous meta-properties of 24 time-series gene expression dataset for heat stress treatment

No.	Sample ID	Eco-type	Geno-type (NT: non- transgenic)	Age (days)	Tissue	Temperature (^∘C)	Time points (minutes (m) or hours (h) after treatment)
1	E-MTAB-375	Columbia	NT	14	rosette leaf (normal light)	32	0h, 5m, 10m, 20m, 40m, 1h, 80m, 100m, 2h, 140m, 160m, 3h, 200m, 220m, 4h, 260m, 280m, 5h, 320m, 340m, 6h, 10h40m, 21h20m
2	E-MTAB-375	Columbia	NT	14	rosette leaf (dark)	32	0h, 5m, 10m, 20m, 40m, 1h, 80m, 100m, 2h, 140m, 160m, 3h, 200m, 220m, 4h, 260m, 280m, 5h, 320m, 340m, 6h, 10h40m, 21h20m
3	GSE5628	Columbia	NT	16	shoots	38	0h, 15m, 30m, 1h, 3h
4	GSE5628	Columbia	NT	16	roots	38	0h, 15m, 30m, 1h, 3h
5	GSE62163	Columbia	NT	21	shoots (EBR)	43	0h, 1h, 3h
6	GSE62163	Columbia	NT	21	shoots (no EBR)	43	0h, 1h, 3h
7	GSE63128	Columbia	NT	18	leaves	38	0h, 8h, 24h
8	E-MEXP-2760	Columbia	NT	35	shoot	40	0h, 20m, 1h
9	E-MEXP-2760	Columbia	mbf1c	35	shoot	40	0h, 20m, 1h
10	E-MEXP-3754	Columbia	NT	21	meristem	40	0h, 15m, 45m
11	GSE19603	Columbia	NT	56	above-ground	37	0h, 24h
12	GSE19603	Columbia	msh1/recA3	56	above-ground	37	0h, 24h
13	GSE43937	Columbia	NT	14	leaves	40	0h, 6h
14	GSE43937	Columbia	er-105	14	leaves	40	0h, 6h
15	E-MEXP-1725	Columbia	NT	35	leaves	37	0h, 2h
16	E-MEXP-1725	Columbia	hsf4-7	35	leaves	37	0h, 2h
17	GSE16222	Columbia	NT	4	seedlings	38	0h, 1h30m
18	GSE63372	Columbia	WT	7	seedlings	37	0h, 1h
19	GSE63372	Columbia	HSFA6b-OE	7	seedlings	37	0h, 1h
20	GSE63372	Columbia	HSFA6b-RD	7	seedlings	37	0h, 1h
21	GSE12619	Columbia	NT	7	seedlings	37	0h, 1h
22	GSE12619	Columbia	til1-1	7	seedlings	37	0h, 1h
23	GSE44053	Columbia	NT	7	seedlings	38	0h, 45m
24	GSE44053	Columbia	NT	7	seedlings	38	0h, 45m

ISSN: 1471-2105