Skip to main content

Table 1 Number of positive and negative correlations for the 11 selected TEs

From: Exploratory analysis of transposable elements expression in the C. elegans early embryo

TE Class Correlations Positive corr. Negative corr.
CEMUDR1 DNA 202 202 0
CEREP1A DNA 48 48 0
Chapaev-1 DNA 4 4 0
PALTA3 DNA 96 96 0
PALTTTAAA3 DNA 104 104 0
TC5 DNA 8 8 0
LINE2F LINE 77 77 0
CER1 LTR 363 323 40
CER3–1 LTR 84 84 0
LTRCER1 LTR 286 248 38
CELE45 SINE 197 106 91
  1. 1st column: list of the 11 TE with RPM > 25 in at least 3 replicates of at least 1 cell type. 2nd column: TE classes (DNA, LINE, SINE, LTR). 3rd column: total number of correlations between TE and genes with RPKM > 25 in at least 3 replicates of at least 1 cell type. 4th column: number of positive correlations. 5th column: number of negative correlations