Exploratory analysis of transposable elements expression in the C. elegans early embryo

BMC Bioinformatics

Table 1 Number of positive and negative correlations for the 11 selected TEs

TE	Class	Correlations	Positive corr.	Negative corr.
CEMUDR1	DNA	202	202	0
CEREP1A	DNA	48	48	0
Chapaev-1	DNA	4	4	0
PALTA3	DNA	96	96	0
PALTTTAAA3	DNA	104	104	0
TC5	DNA	8	8	0
LINE2F	LINE	77	77	0
CER1	LTR	363	323	40
CER3–1	LTR	84	84	0
LTRCER1	LTR	286	248	38
CELE45	SINE	197	106	91

1st column: list of the 11 TE with RPM > 25 in at least 3 replicates of at least 1 cell type. 2nd column: TE classes (DNA, LINE, SINE, LTR). 3rd column: total number of correlations between TE and genes with RPKM > 25 in at least 3 replicates of at least 1 cell type. 4th column: number of positive correlations. 5th column: number of negative correlations

ISSN: 1471-2105