From: Exploring effective approaches for haplotype block phasing
Approach | Tool | Chr1 | Chr6 | Chr17 |
---|---|---|---|---|
Individual | BEAGLE | 1.39 | 1.12 | 2.03 |
 | SHAPEIT2 | 1.33 | 1.20 | 2.06 |
 | EAGLE2 | 1.36 | 1.6 | 1.90 |
 | HAPI-UR | 2.14 | 1.81 | 3.00 |
 | IMPUTE | 2.83 | 2.46 | 4.30 |
 | fastPHASE | 4.10 | 3.43 | 5.32 |
 | MaCH | - | - | 4.10 |
Consensus | SHAPEIT2, EAGLE2 and BEAGLE | 1.14 | 0.98 | 1.68 |
 | SHAPEIT2, EAGLE2, BEAGLE, IMPUTE and HAPI-UR | 1.2 | 1.04 | 1.76 |
 | SHAPEIT2, EAGLE2 and HAPI-UR | 1.24 | 1.08 | 1.79 |
 | SHAPEIT2, BEAGLE and fastPHASE | 1.37 | 1.14 | 2.06 |
 | SHAPEIT2, EAGLE2, IMPUTE, fastPHASE and HAPI-UR | 1.41 | 1.19 | 2.1 |
 | EAGLE2, IMPUTE and HAPI-UR | 1.48 | 1.27 | 2.16 |
 | SHAPEIT2, fastPHASE and HAPI-UR | 1.66 | 1.43 | 2.41 |
 | IMPUTE, fastPHASE and HAPI-UR | 2.16 | 1.82 | 3.19 |