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Fig. 2 | BMC Bioinformatics

Fig. 2

From: DIRECT: RNA contact predictions by integrating structural patterns

Fig. 2

The contact and RMSD distributions in different RNA structures. The 11 structures are generated by 3dRNA, RNAcomposer, simRNA, and Vfold3D. a shows the correlation between native contacts and RMSDs. The predicted structure with the lowest RMSD contains 35 native contacts (100%) while the predicted structure with the largest RMSD contains 29 native contacts (83%). The color in (b) is the percentage of DIRECT predicted contacts out of the top 100 predicted contacts (RC/PC). The predicted structure with the lowest RMSD contains 40 predicted contacts (40%) while the predicted structure with the largest RMSD contains 32 predicted contacts (32%). The results suggest that DIRECT is able to identify more native contacts than non-native models with large RMSDs

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